Improve clarity of code in kappa compiler and counter compiler #676
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* Comments, improving variable names, edit to the kasim manual * Rename Locality.annot into Locality.annoted * Change tuples to records in lKappa_compiler * Refactor Signature.mli and logic to build them * refactored assemble_rule and name_and_purify_rule * Clarify counter_agent_info fetched from signatures with record and names * Cleanup of counters_compiler
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improve readability of code, by mainly :